1 |
d6ca840d
|
petrh
|
from Utilities.Database import database_data_line, database_record_logs
|
2 |
|
|
from Utilities import configure_functions
|
3 |
527abccd
|
petrh
|
import pymongo
|
4 |
d6ca840d
|
petrh
|
import re
|
5 |
527abccd
|
petrh
|
|
6 |
04a2b5a4
|
petrh
|
# specify mongodb connection
|
7 |
728f8c5d
|
petrh
|
MONGODB_CONNECTION = "mongodb://root:root@database"
|
8 |
04a2b5a4
|
petrh
|
# mongodb account name
|
9 |
|
|
MONGODB_ACC_NAME = "root"
|
10 |
|
|
# mongodb account password
|
11 |
|
|
MONGODB_ACC_PASSWORD = "root"
|
12 |
|
|
# mongodb data database
|
13 |
ce22f1ff
|
petrh
|
MONGODB_DATA_DATABASE = "open-data-db"
|
14 |
04a2b5a4
|
petrh
|
# mongodb collection with aviable datasets
|
15 |
|
|
MONGODB_DATASET_COLLECTION = "DATASETS"
|
16 |
0a2832fb
|
vastja
|
# mongodb collection with aviable diveces of datasets
|
17 |
|
|
MONGODB_DATASET_DEVICES_COLLECTION = "DEVICES"
|
18 |
04a2b5a4
|
petrh
|
|
19 |
|
|
# Path to processed data
|
20 |
|
|
PROCESSED_DATA_PATH = "ProcessedData/"
|
21 |
|
|
|
22 |
|
|
|
23 |
|
|
def create_database_connection():
|
24 |
|
|
"""
|
25 |
|
|
Creates connection to mongoDB
|
26 |
|
|
|
27 |
|
|
Returns:
|
28 |
|
|
Connection to mongoDB
|
29 |
|
|
"""
|
30 |
|
|
client = pymongo.MongoClient(MONGODB_CONNECTION)
|
31 |
527abccd
|
petrh
|
|
32 |
04a2b5a4
|
petrh
|
# Authenticating
|
33 |
|
|
client.admin.authenticate(MONGODB_ACC_NAME, MONGODB_ACC_PASSWORD)
|
34 |
|
|
|
35 |
|
|
database = client[MONGODB_DATA_DATABASE]
|
36 |
|
|
|
37 |
|
|
return database
|
38 |
|
|
|
39 |
|
|
|
40 |
|
|
def get_data_from_file(filename, config):
|
41 |
|
|
"""
|
42 |
|
|
Opens processed file, reads it line by line
|
43 |
|
|
name, ocurrence, date
|
44 |
|
|
searches name in config and adds device map coordinates
|
45 |
|
|
than creates a dictionary with date without hours as key
|
46 |
|
|
and list of data lines as value.
|
47 |
|
|
Args:
|
48 |
|
|
filename: name of processed file
|
49 |
|
|
config: loaded configuration file of dataset
|
50 |
|
|
|
51 |
|
|
Returns:
|
52 |
|
|
dictionary with date without hours as key
|
53 |
|
|
and list of Datalines as value
|
54 |
|
|
"""
|
55 |
|
|
dataset_name = config["dataset-name"]
|
56 |
|
|
dataset_path = PROCESSED_DATA_PATH + dataset_name + '/'
|
57 |
527abccd
|
petrh
|
|
58 |
04a2b5a4
|
petrh
|
f = open(dataset_path + filename, "r")
|
59 |
|
|
|
60 |
|
|
devices = config["devices"]
|
61 |
527abccd
|
petrh
|
date_dict = dict()
|
62 |
|
|
|
63 |
|
|
for line in f:
|
64 |
|
|
line = line[:-1]
|
65 |
|
|
|
66 |
04a2b5a4
|
petrh
|
csv_column = line.split(";")
|
67 |
527abccd
|
petrh
|
|
68 |
04a2b5a4
|
petrh
|
name = csv_column[0]
|
69 |
2d129043
|
petrh
|
|
70 |
0a2832fb
|
vastja
|
if devices[name]["x"] == "SKIP" or devices[name]["y"] == "SKIP":
|
71 |
|
|
continue
|
72 |
|
|
|
73 |
04a2b5a4
|
petrh
|
occurrence = csv_column[1]
|
74 |
|
|
date = csv_column[2]
|
75 |
d6ca840d
|
petrh
|
data_line = database_data_line.DatabaseDataLine(
|
76 |
ce22f1ff
|
petrh
|
name, devices[name]["x"], devices[name]["y"], date, occurrence)
|
77 |
527abccd
|
petrh
|
|
78 |
d6d75a03
|
petrh
|
# if you want to change table split by hours or months change this YYYY-mm-hh-dd
|
79 |
|
|
date_without_hours = date[:-3]
|
80 |
527abccd
|
petrh
|
if date_without_hours not in date_dict:
|
81 |
|
|
date_dict[date_without_hours] = list()
|
82 |
|
|
|
83 |
ce22f1ff
|
petrh
|
date_dict[date_without_hours].append(
|
84 |
d6ca840d
|
petrh
|
data_line.to_dictionary())
|
85 |
527abccd
|
petrh
|
|
86 |
|
|
return date_dict
|
87 |
|
|
|
88 |
|
|
|
89 |
0a2832fb
|
vastja
|
def load_data_to_database(database_connection,dataset_name, data_dic, file_name):
|
90 |
04a2b5a4
|
petrh
|
"""
|
91 |
|
|
Takes data_dic created in method get_data_from_file
|
92 |
|
|
and loads into into database where collection name is dataset_name + data_dic key
|
93 |
|
|
and data lines are line in collection
|
94 |
527abccd
|
petrh
|
|
95 |
04a2b5a4
|
petrh
|
Args:
|
96 |
0a2832fb
|
vastja
|
database_connection: created connection to a MONGODB
|
97 |
|
|
config: loaded configuration file of dataset
|
98 |
04a2b5a4
|
petrh
|
data_dic: dictionary of data lines created in get_data_from_file
|
99 |
0a2832fb
|
vastja
|
file_name: name of file containing data
|
100 |
|
|
"""
|
101 |
|
|
|
102 |
|
|
for date in data_dic:
|
103 |
|
|
dataset_collections = database_connection[dataset_name]
|
104 |
ce378142
|
petrh
|
dataset_collections.insert_one({'date': date})
|
105 |
0a2832fb
|
vastja
|
date_dataset = database_connection[dataset_name + date]
|
106 |
|
|
date_dataset.insert_many(data_dic[date])
|
107 |
|
|
|
108 |
|
|
|
109 |
|
|
|
110 |
|
|
def check_or_update_datasets_collection(database_connection,config):
|
111 |
04a2b5a4
|
petrh
|
"""
|
112 |
0a2832fb
|
vastja
|
Checks if DATASETS collection contains dataset and if display name was not updated
|
113 |
527abccd
|
petrh
|
|
114 |
0a2832fb
|
vastja
|
Args:
|
115 |
|
|
database_connection: created connection to a MONGODB
|
116 |
|
|
config: loaded configuration file of dataset
|
117 |
|
|
"""
|
118 |
04a2b5a4
|
petrh
|
# collection where are specified aviable datasets
|
119 |
0a2832fb
|
vastja
|
collection_datasets = database_connection[MONGODB_DATASET_COLLECTION]
|
120 |
|
|
|
121 |
|
|
dataset_name = config['dataset-name']
|
122 |
|
|
display_name = config['display-name']
|
123 |
|
|
|
124 |
|
|
query = {'key-name': dataset_name}
|
125 |
527abccd
|
petrh
|
|
126 |
04a2b5a4
|
petrh
|
# check if newly added data already have a dataset specified in collection
|
127 |
0a2832fb
|
vastja
|
dataset_present = collection_datasets.find_one(query)
|
128 |
527abccd
|
petrh
|
|
129 |
|
|
if dataset_present is None:
|
130 |
d6ca840d
|
petrh
|
collection_datasets.insert_one({'key-name': dataset_name, 'display-name': display_name,'updated': 0})
|
131 |
0a2832fb
|
vastja
|
elif dataset_present['display-name'] != display_name:
|
132 |
|
|
newvalues = { "$set": { 'display-name': display_name } }
|
133 |
|
|
collection_datasets.update_one(query, newvalues)
|
134 |
527abccd
|
petrh
|
|
135 |
0a2832fb
|
vastja
|
|
136 |
d6ca840d
|
petrh
|
def update_devices_collection(config):
|
137 |
0a2832fb
|
vastja
|
"""
|
138 |
d6ca840d
|
petrh
|
Checks if there are any changes in devices specified in config file against
|
139 |
|
|
devices processed and loaded into the database
|
140 |
|
|
|
141 |
|
|
If there are new devices replaces old device in databse by new ones
|
142 |
0a2832fb
|
vastja
|
|
143 |
|
|
Args:
|
144 |
|
|
config: loaded configuration file of dataset
|
145 |
d6ca840d
|
petrh
|
|
146 |
|
|
Returns:
|
147 |
|
|
True - when changes are found and devices replaced
|
148 |
|
|
False - when there were no changes
|
149 |
0a2832fb
|
vastja
|
"""
|
150 |
d6ca840d
|
petrh
|
database_connection = create_database_connection()
|
151 |
0a2832fb
|
vastja
|
dataset_name = config['dataset-name']
|
152 |
d6ca840d
|
petrh
|
devices = config['devices']
|
153 |
|
|
|
154 |
|
|
change_in_devices = False
|
155 |
0a2832fb
|
vastja
|
|
156 |
|
|
collection_devices = database_connection[dataset_name + MONGODB_DATASET_DEVICES_COLLECTION]
|
157 |
|
|
|
158 |
d6ca840d
|
petrh
|
devices_cursor = collection_devices.find()
|
159 |
|
|
|
160 |
|
|
db_device_dict = dict()
|
161 |
|
|
|
162 |
|
|
for device in devices_cursor:
|
163 |
|
|
name = device['name']
|
164 |
|
|
db_device_dict[name] = {'name': name, 'x': device['x'] , 'y': device['y']}
|
165 |
|
|
|
166 |
|
|
|
167 |
|
|
valid_devices = configure_functions.return_dictionary_of_valid_devices(devices)
|
168 |
|
|
|
169 |
|
|
if len(valid_devices.keys()) != len(db_device_dict.keys()):
|
170 |
|
|
change_in_devices = True
|
171 |
|
|
|
172 |
|
|
if change_in_devices == False:
|
173 |
|
|
for device in valid_devices.keys():
|
174 |
|
|
if device in db_device_dict:
|
175 |
|
|
config_x = valid_devices[device]['x']
|
176 |
|
|
config_y = valid_devices[device]['y']
|
177 |
|
|
db_x = db_device_dict[device]['x']
|
178 |
|
|
db_y = db_device_dict[device]['y']
|
179 |
|
|
if config_x != db_x or config_y != db_y:
|
180 |
|
|
change_in_devices = True
|
181 |
|
|
break
|
182 |
0a2832fb
|
vastja
|
|
183 |
|
|
|
184 |
d6ca840d
|
petrh
|
if change_in_devices == True:
|
185 |
|
|
collection_devices.delete_many({})
|
186 |
|
|
devices_list = list()
|
187 |
0a2832fb
|
vastja
|
|
188 |
d6ca840d
|
petrh
|
for device in devices.keys():
|
189 |
|
|
x = devices[device]['x']
|
190 |
|
|
y = devices[device]['y']
|
191 |
|
|
if not (x == "SKIP" or x == "UNKNOWN!" or y == "SKIP" or y == "UNKNOWN!"):
|
192 |
|
|
devices_list.append({'name': device , 'x': x , 'y': y })
|
193 |
0a2832fb
|
vastja
|
|
194 |
d6ca840d
|
petrh
|
collection_devices.insert_many(devices_list)
|
195 |
0a2832fb
|
vastja
|
|
196 |
d6ca840d
|
petrh
|
return change_in_devices
|
197 |
0a2832fb
|
vastja
|
|
198 |
d6ca840d
|
petrh
|
|
199 |
|
|
def remove_dataset_database(dataset_name):
|
200 |
|
|
"""
|
201 |
|
|
Removes dataset entries from database
|
202 |
|
|
Args:
|
203 |
|
|
dataset_name: name of dataset that has existing configuration file
|
204 |
0a2832fb
|
vastja
|
"""
|
205 |
d6ca840d
|
petrh
|
# Creating connection
|
206 |
|
|
mydb = create_database_connection()
|
207 |
|
|
|
208 |
|
|
# collection where are specified aviable datasets
|
209 |
|
|
collection_datasets = mydb[MONGODB_DATASET_COLLECTION]
|
210 |
|
|
|
211 |
|
|
collection_datasets.delete_one({"key-name": dataset_name})
|
212 |
|
|
print("Removing record from DATASETS collection")
|
213 |
|
|
|
214 |
0a2832fb
|
vastja
|
|
215 |
d6ca840d
|
petrh
|
# Retrieve list of all collections
|
216 |
|
|
collections = mydb.list_collection_names()
|
217 |
|
|
|
218 |
|
|
# Drop of all collections
|
219 |
|
|
for name in collections:
|
220 |
|
|
if name.startswith(dataset_name):
|
221 |
|
|
mydb[name].drop()
|
222 |
|
|
print("Dropping: " + name)
|
223 |
|
|
|
224 |
|
|
|
225 |
|
|
def reset_dataset_database(dataset_name):
|
226 |
|
|
"""
|
227 |
|
|
Reset dataset in database
|
228 |
|
|
- delete everything from except crawled links and mention in DATASETS collection
|
229 |
0a2832fb
|
vastja
|
Args:
|
230 |
d6ca840d
|
petrh
|
dataset_name: name of dataset that has existing configuration file
|
231 |
0a2832fb
|
vastja
|
"""
|
232 |
d6ca840d
|
petrh
|
# Creating connection
|
233 |
|
|
mydb = create_database_connection()
|
234 |
0a2832fb
|
vastja
|
|
235 |
d6ca840d
|
petrh
|
pattern = re.compile(dataset_name+'[0-9]+-[0-9]+-+[0-9]+')
|
236 |
0a2832fb
|
vastja
|
|
237 |
d6ca840d
|
petrh
|
# Retrieve list of all collections
|
238 |
|
|
collections = mydb.list_collection_names()
|
239 |
0a2832fb
|
vastja
|
|
240 |
d6ca840d
|
petrh
|
# Drop of all collections
|
241 |
|
|
for name in collections:
|
242 |
|
|
if pattern.match(name):
|
243 |
|
|
mydb[name].drop()
|
244 |
753d424e
|
petrh
|
print("Dropping: " + name)
|
245 |
0a2832fb
|
vastja
|
|
246 |
d6ca840d
|
petrh
|
database_record_logs.reset_ignore_set_loaded(dataset_name)
|